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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112151043SRY-box transcription factor 17. (390 aa)    
Predicted Functional Partners:
tcf7
Transcription factor 7.
    
0.915
LOC112148818
Transcription factor 7 like 1b.
    
0.915
LOC112162929
HMG box domain-containing protein.
    
0.911
tcf7l2
Transcription factor 7 like 2.
    
0.911
ENSOMEP00000026430
HMG box domain-containing protein.
    
 0.880
ENSOMEP00000001151
SRY-box transcription factor 32.
  
  
0.877
ENSOMEP00000024995
Lymphoid enhancer-binding factor 1.
    
0.825
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.793
ENSOMEP00000017051
Homeobox domain-containing protein.
    
 0.730
ENSOMEP00000020977
POU domain, class 5, transcription factor 3.
    
 0.730
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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