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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emid1EMI domain-containing protein. (485 aa)    
Predicted Functional Partners:
ENSOMEP00000010591
Uncharacterized protein.
    
  0.681
ENSOMEP00000021778
Uncharacterized protein.
    
  0.681
LOC112161061
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
    
  0.615
furin
Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family.
    
  0.615
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
    
 0.592
ENSOMEP00000020815
TROVE domain-containing protein.
    
  0.572
ENSOMEP00000013047
C1q domain-containing protein.
   
 
0.543
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.523
setdb1
SET domain bifurcated histone lysine methyltransferase 1b.
    
  0.511
ENSOMEP00000020966
Ribosomal protein S27a.
    
  0.481
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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