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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
foxred1FAD-dependent oxidoreductase domain containing 1. (510 aa)    
Predicted Functional Partners:
ndufs5
NADH:ubiquinone oxidoreductase subunit S5.
    
 
 0.734
vars1
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.616
yars2
Tyrosine--tRNA ligase.
   
  
 0.601
ENSOMEP00000010367
Uncharacterized protein.
      
 0.597
dmac2
Si:ch1073-228b5.2.
   
  
 0.581
pmpca
Peptidase (mitochondrial processing) alpha; Belongs to the peptidase M16 family.
   
 
 0.581
ndufaf1
NADH:ubiquinone oxidoreductase complex assembly factor 1.
   
  
 0.568
LOC112141465
Cytochrome c oxidase assembly factor COX18.
   
  
 0.567
ecsit
ECSIT signalling integrator.
   
  
 0.561
suox
Sulfite oxidase.
      
 0.559
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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