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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001158Carboxypeptidase; Belongs to the peptidase S10 family. (563 aa)    
Predicted Functional Partners:
LOC112155118
Galactosidase, beta 1-like; Belongs to the glycosyl hydrolase 35 family.
   
 0.882
glb1
Beta-galactosidase.
   
 0.882
LOC112149097
Sialidase 4.
    
 0.830
ENSOMEP00000026528
Neuraminidase 1.
   
 0.786
LOC112158204
Cathepsin Bb; Belongs to the peptidase C1 family.
   
 0.714
LOC112160419
Cathepsin Ba; Belongs to the peptidase C1 family.
   
 0.714
ctsh
Cathepsin H; Belongs to the peptidase C1 family.
   
 0.690
ctsf
Cathepsin F; Belongs to the peptidase C1 family.
   
 0.684
ctsc
Cathepsin C; Belongs to the peptidase C1 family.
   
 0.663
ENSOMEP00000030773
Cathepsin O; Belongs to the peptidase C1 family.
   
 0.657
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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