STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spag7Sperm-associated antigen 7 homolog. (229 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.894
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
   
 
 0.658
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.570
med29
Mediator complex subunit 29.
  
 
  0.568
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.558
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.550
fancl
FA complementation group L.
    
  0.515
ENSOMEP00000020292
FA complementation group C.
    
  0.515
FANCG
FA complementation group G.
    
  0.515
fancf
FA complementation group F.
    
  0.515
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.