STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001207Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (67 aa)    
Predicted Functional Partners:
ENSOMEP00000001715
Uncharacterized protein.
   
 0.750
LOC112138041
Calpain, small subunit 1 b.
   
 0.688
LOC112149437
Uncharacterized protein.
   
 0.688
ENSOMEP00000009363
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000009387
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000015987
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000016023
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000027877
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000032288
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000018388
Penta-EF-hand domain containing 1.
   
 0.582
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.