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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001237Myocardial zonula adherens protein. (645 aa)    
Predicted Functional Partners:
ENSOMEP00000002639
Troponin T2c, cardiac.
   
 0.764
smim20
Small integral membrane protein 20.
   
 0.764
ENSOMEP00000012340
Uncharacterized protein.
   
 0.764
ENSOMEP00000013451
Troponin T type 2a (cardiac).
   
 0.764
ENSOMEP00000016935
Uncharacterized protein.
   
 0.764
gatd1
Glutamine amidotransferase like class 1 domain containing 1.
   
 0.764
ENSOMEP00000018127
Uncharacterized protein.
   
 0.764
LOC112152341
Troponin T type 3a (skeletal, fast).
   
 0.764
ENSOMEP00000027832
Uncharacterized protein.
   
 0.764
ENSOMEP00000031375
Troponin T type 2b (cardiac).
   
 0.764
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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