close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112142479Calpain 5b; Belongs to the peptidase C2 family. (681 aa)    
Predicted Functional Partners:
ENSOMEP00000001715
Uncharacterized protein.
   
 0.771
LOC112149437
Uncharacterized protein.
 
 
 0.710
LOC112138041
Calpain, small subunit 1 b.
 
 
 0.704
ENSOMEP00000009363
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000009387
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000015987
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000016023
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000027877
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000032288
Uncharacterized protein.
   
 
  0.607
ENSOMEP00000018388
Penta-EF-hand domain containing 1.
   
 0.582
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.