Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001266Myomesin 1b. (1430 aa)    
Predicted Functional Partners:
ENSOMEP00000009675
Myomesin 1a (skelemin).
  
 
 
0.914
LOC112161196
Uncharacterized protein.
    
 
0.913
LOC112145223
Musculoskeletal, embryonic nuclear protein 1b.
   
 0.706
ENSOMEP00000007865
BTB domain-containing protein.
    
 0.601
ENSOMEP00000018980
Uncharacterized protein.
    
 0.601
pou6f2
POU domain protein.
    
 
 0.518
bub1b
BUB1 mitotic checkpoint serine/threonine kinase Bb.
    
 0.509
stimate
STIM activating enhance.
   
 0.485
ENSOMEP00000036125
Transmembrane protein 110, like.
   
 0.485
mysm1
Myb-like, SWIRM and MPN domains 1.
    
  0.474
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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