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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112137644LRAT domain-containing protein. (213 aa)    
Predicted Functional Partners:
ENSOMEP00000013966
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
    
 0.979
dhrs3
Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.978
LOC112147229
Retinoid isomerohydrolase RPE65 a.
     
 0.977
rdh10
Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.975
LOC112162325
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
    
 0.975
sdr16c5
Short chain dehydrogenase/reductase family 16C, member 5a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.975
ENSOMEP00000001949
Retinol dehydrogenase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.974
LOC112155911
Dehydrogenase/reductase (SDR family) member 4.
    
 0.974
LOC112153919
Si:ch1073-13h15.3.
    
 0.973
ENSOMEP00000020681
Lecithin retinol acyltransferase b, tandem duplicate 2.
  
  
 
0.972
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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