STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112149662Spartin b. (596 aa)    
Predicted Functional Partners:
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.933
LOC112143049
Spartin a.
  
  
 
0.898
ENSOMEP00000012874
E3 ubiquitin-protein ligase.
    
 
 0.761
LOC112144968
E3 ubiquitin-protein ligase.
    
 
 0.761
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 
 0.646
ENSOMEP00000033446
HECT domain-containing protein.
    
 
 0.646
snx15
Sorting nexin 15.
      
 0.534
ENSOMEP00000021483
Torsin family 4, member Aa.
      
 0.533
nipa1
NIPA magnesium transporter 1.
   
  
 0.517
ENSOMEP00000032125
Tripartite motif containing 45.
      
 0.503
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.