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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112145387Zgc:109965. (549 aa)    
Predicted Functional Partners:
ccdc47
Coiled-coil domain containing 47.
    
 
 0.925
tmem147
Transmembrane protein 147.
    
 
 0.910
TMCO1
Transmembrane and coiled-coil domains 1.
   
 
 0.817
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
 
 0.817
rpl13
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
    
   0.786
rpl35
Ribosomal protein L35.
    
   0.786
ENSOMEP00000005743
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
   0.786
rpl30
Ribosomal protein L30.
    
   0.786
ENSOMEP00000012527
SEC61 translocon gamma subunit.
    
   0.786
rpl8
Ribosomal protein L8.
    
   0.786
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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