STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tanc1Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1b. (1904 aa)    
Predicted Functional Partners:
agap3
ArfGAP with GTPase domain, ankyrin repeat and PH domain 3.
    
   0.682
LOC112159479
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
   0.682
LOC112156744
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1.
    
   0.682
AGAP2
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
   0.682
ENSOMEP00000016622
Serine/threonine-protein phosphatase.
   
 0.661
ENSOMEP00000027276
Serine/threonine-protein phosphatase.
   
 0.661
ift81
Intraflagellar transport 81 homolog.
    
 0.636
ENSOMEP00000012448
KH type-2 domain-containing protein.
    
 0.626
ENSOMEP00000018872
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.626
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.618
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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