close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vrk3VRK serine/threonine kinase 3. (513 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
    
 0.908
bysl
Bystin-like.
    
 0.849
riok2
RIO kinase 2 (yeast).
    
 0.846
tsr1
TSR1 ribosome maturation factor.
    
 0.820
nob1
NIN1 (RPN12) binding protein 1 homolog.
    
 0.792
csnk1a1
Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.
   
0.747
ENSOMEP00000020653
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.742
ENSOMEP00000012448
KH type-2 domain-containing protein.
    
 0.723
ENSOMEP00000018872
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.723
rps9
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
    
  0.718
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.