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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001488Cell adhesion molecule 1a. (418 aa)    
Predicted Functional Partners:
LOC112149175
Cell adhesion molecule 1b.
  
  
 
0.883
ENSOMEP00000033089
Ig-like domain-containing protein.
    
  0.768
LOC112142514
Nectin cell adhesion molecule 3b.
    
0.719
LOC112149637
Uncharacterized protein.
    
0.702
LOC112154737
Uncharacterized protein.
    
0.702
LOC112155326
Uncharacterized protein.
    
0.702
ENSOMEP00000026451
Uncharacterized protein.
    
0.702
LOC112149677
Cell adhesion molecule 2b.
     
0.639
PTK7
Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 
0.526
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
  0.499
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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