close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112151574Rho guanine nucleotide exchange factor (GEF) 19. (955 aa)    
Predicted Functional Partners:
epha8
Uncharacterized protein.
    
 0.698
CDC42
Cell division cycle 42.
    
 0.665
LOC112144774
Cell division cycle 42.
    
 0.665
epha2
Eph receptor A2 a.
    
 0.661
LOC112138531
Eph receptor A2 b.
    
 0.661
ENSOMEP00000006887
Ras homolog gene family, member Gd.
    
 0.599
LOC112138676
Ras homolog family member Gb.
    
 0.599
LOC112144861
Uncharacterized protein.
    
  0.535
LOC112159660
Uncharacterized protein.
    
  0.535
LOC112144872
Ras homolog family member Ca.
    
  0.535
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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