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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001520Structural maintenance of chromosomes flexible hinge domain containing 1. (1779 aa)    
Predicted Functional Partners:
scaf11
SR-related CTD-associated factor 11.
   
    0.715
ahctf1
AT hook containing transcription factor 1.
   
  
 0.693
ENSOMEP00000000959
Mix-type homeobox gene 1.
      
 0.501
bdp1
Myb_DNA-bind_7 domain-containing protein.
   
    0.489
LOC112137566
Uncharacterized protein.
    
   0.485
nup133
Nucleoporin 133.
   
  
 0.477
nudcd1
NudC domain containing 1.
    
   0.476
ENSOMEP00000000292
Baculoviral IAP repeat containing 6.
   
   0.457
ENSOMEP00000020966
Ribosomal protein S27a.
      
 0.456
btaf1
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.
   
    0.429
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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