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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1121426795-hydroxytryptamine (serotonin) receptor 3A; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (494 aa)    
Predicted Functional Partners:
ENSOMEP00000034627
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
  
 
0.688
ENSOMEP00000019513
Neur_chan_memb domain-containing protein.
    
0.673
ENSOMEP00000019563
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
0.673
ENSOMEP00000019594
Neur_chan_memb domain-containing protein.
    
0.673
LOC112153097
Neuregulin 2b.
   
  
 0.616
LOC112138811
Neuregulin 2a.
   
  
 0.616
ptprt
Protein tyrosine phosphatase receptor type T.
      
 0.597
LOC112143850
Si:dkey-238d18.5.
      
 0.536
mag
Myelin associated glycoprotein.
      
 0.499
ENSOMEP00000003924
Vomeronasal 2, receptor 1.
      
 0.493
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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