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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112155161Anion exchange protein. (1075 aa)    
Predicted Functional Partners:
LOC112163132
Ras homolog family member F.
    
  0.593
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
  0.542
ENSOMEP00000008900
Family with sequence similarity 169 member B.
    
  0.516
uaca
Uveal autoantigen with coiled-coil domains and ankyrin repeats b.
    
  0.514
dnali1
Dynein, axonemal, light intermediate chain 1.
   
  
 0.511
LOC112142002
Uncharacterized protein.
     
 0.500
ENSOMEP00000025555
Cytochrome b5 domain containing 1.
   
  
 0.493
LOC112150138
Tyrosine-protein kinase.
    
  0.474
ENSOMEP00000025667
Spleen tyrosine kinase.
    
  0.474
ENSOMEP00000001766
5-methyltetrahydrofolate-homocysteine methyltransferase.
   
 
  0.471
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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