STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubxn6UBX domain protein 6. (437 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.998
ubxn4
UBX domain-containing protein.
    
 0.998
ENSOMEP00000036131
UBX domain protein 7.
    
 
 0.997
faf1
Fas (TNFRSF6) associated factor 1.
    
 0.992
ENSOMEP00000021392
Uncharacterized protein.
    
 0.991
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 0.991
ubxn2a
UBX domain protein 2A.
    
 0.988
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
   
 
0.979
spata5l1
Spermatogenesis associated 5-like 1.
    
 0.969
ubxn1
UBX domain protein 1.
   
 0.969
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.