Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubxn6UBX domain protein 6. (437 aa)    
Predicted Functional Partners:
ubxn4
UBX domain-containing protein.
    
 0.999
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.998
ubxn2a
UBX domain protein 2A.
    
 0.998
ENSOMEP00000021392
Uncharacterized protein.
    
 0.993
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 0.993
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.990
ubxn1
UBX domain protein 1.
   
 0.989
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
   
 
 0.985
vcpkmt
Valosin containing protein lysine (K) methyltransferase.
    
 
 0.978
svip
Si:ch73-147o17.1.
    
 0.972
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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