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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp28Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family. (1193 aa)    
Predicted Functional Partners:
ENSOMEP00000020966
Ribosomal protein S27a.
   
 0.919
ENSOMEP00000035400
Ubiquitin-like domain-containing protein.
   
 0.919
ENSOMEP00000002833
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.913
ENSOMEP00000019169
Ubiquitin-like domain-containing protein.
   
 0.888
ENSOMEP00000027927
Ubiquitin-like domain-containing protein.
   
 0.880
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.877
uvssa
UV-stimulated scaffold protein A.
    
 0.765
CLSPN
Claspin.
    
 0.763
myc
Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.
    
 0.744
usp40
Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family.
   
0.732
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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