STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001567FERM domain-containing protein. (385 aa)    
Predicted Functional Partners:
ENSOMEP00000012721
Rap guanine nucleotide exchange factor (GEF) 2.
    
 
 0.735
ENSOMEP00000001592
Uncharacterized protein.
 
      0.705
plekha2
Si:ch211-204d2.4.
    
  0.687
rapgef6
Rap guanine nucleotide exchange factor (GEF) 6.
    
 0.684
LOC112154165
Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b.
    
  0.651
LOC112161777
Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1a.
    
  0.624
LOC112155731
PH domain-containing protein.
    
 0.610
gab1
GRB2-associated binding protein 1.
    
 0.610
LOC112161409
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
   
  0.607
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
   
  0.607
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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