STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube3bUbiquitin protein ligase E3B. (1068 aa)    
Predicted Functional Partners:
ENSOMEP00000003243
Ubiquitin protein ligase E3C.
   
 
0.814
trip12
Thyroid hormone receptor interactor 12.
     
0.735
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
      
 0.597
ENSOMEP00000001754
UBIQUITIN_CONJUGAT_2 domain-containing protein.
     
 0.545
ENSOMEP00000020966
Ribosomal protein S27a.
     
 0.528
ENSOMEP00000035400
Ubiquitin-like domain-containing protein.
    
 0.495
pudp
Pseudouridine 5'-phosphatase.
      
 0.463
ENSOMEP00000026457
Uncharacterized protein.
      
 0.457
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
     
 0.449
ube2c
Ubiquitin-conjugating enzyme E2C; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.438
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.