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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1187 aa)    
Predicted Functional Partners:
ilf3
Interleukin enhancer binding factor 3b.
   
 
 0.922
pabpn1
Poly(A) binding protein, nuclear 1.
   
 0.895
LOC112146571
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
 0.889
LOC112137584
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
 0.889
PABPN1L
Poly(A) binding protein nuclear 1 like, cytoplasmic.
   
 0.889
ENSOMEP00000011752
Heterogeneous nuclear ribonucleoprotein M.
   
 0.888
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
  
 0.884
alyref
Aly/REF export factor.
   
 0.873
msl1
MSL complex subunit 1b.
   
 0.870
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.868
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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