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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubap1Ubiquitin associated protein 1. (463 aa)    
Predicted Functional Partners:
vps37b
Zgc:114173.
     
  0.634
vps25
Vacuolar protein sorting 25 homolog.
     
  0.634
vps36
Vacuolar protein sorting 36 homolog.
     
  0.634
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
     
  0.634
LOC112137583
VPS37C subunit of ESCRT-I.
     
  0.634
LOC112137566
Uncharacterized protein.
     
  0.526
LOC112147885
Multivesicular body subunit 12Bb.
     
  0.509
LOC112163121
Multivesicular body subunit 12Ba.
     
  0.509
ENSOMEP00000001140
Si:ch211-284f22.3.
     
  0.499
vps37a
VPS37A subunit of ESCRT-I.
     
  0.499
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.