Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
stox2Storkhead box 2a. (1068 aa)    
Predicted Functional Partners:
pwwp2b
PWWP domain containing 2B.
      
 0.676
LOC112149425
Olfactory receptor.
      
 0.625
fam110b
Family with sequence similarity 110 member B.
    
   0.602
nepro
Nucleolus and neural progenitor protein.
      
 0.595
tmem145
Transmembrane protein 145.
      
 0.594
ENSOMEP00000021643
Uncharacterized protein.
      
 0.586
prss56
Serine protease 56; Belongs to the peptidase S1 family.
      
 0.570
uvssa
UV-stimulated scaffold protein A.
      
 0.543
TTC28
Tetratricopeptide repeat domain 28.
      
 0.501
ENSOMEP00000003067
Cell division cycle and apoptosis regulator 1.
      
 0.485
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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