Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tll1Metalloendopeptidase. (1026 aa)    
Predicted Functional Partners:
chrd
Chordin; Belongs to the chordin family.
   
 
 0.940
LOC112143001
Procollagen C-endopeptidase enhancer a.
    
 0.790
ENSOMEP00000024402
Procollagen C-endopeptidase enhancer 2b.
    
 0.790
ENSOMEP00000011688
Collagen, type I, alpha 1a.
    
 0.677
ENSOMEP00000025205
Collagen, type I, alpha 1b.
    
 0.677
LOC112149994
Bone morphogenetic protein 16.
    
 
 0.614
bmp2
Bone morphogenetic protein 2b.
    
 
 0.614
bmp4
Bone morphogenetic protein 4.
    
 
 0.614
tbx3
T-box transcription factor 3a.
      
 0.608
LOC112152676
Sizzled.
    
 
 0.598
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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