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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tll1Metalloendopeptidase. (1026 aa)    
Predicted Functional Partners:
chrd
Chordin; Belongs to the chordin family.
   
 
 0.918
LOC112143001
Procollagen C-endopeptidase enhancer a.
   
0.741
ENSOMEP00000024402
Procollagen C-endopeptidase enhancer 2b.
   
0.741
LOC112143598
Uncharacterized protein.
   
 
  0.580
LOC112143599
Uncharacterized protein.
   
 
  0.580
LOC112152676
Sizzled.
    
 
 0.571
atp5f1b
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
      
 0.536
prcp
Prolylcarboxypeptidase (angiotensinase C).
     
 0.522
ENSOMEP00000021460
Dipeptidyl-peptidase 7.
     
 0.522
ENSOMEP00000011688
Collagen, type I, alpha 1a.
    
 0.512
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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