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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc102aCoiled-coil domain containing 102A. (562 aa)    
Predicted Functional Partners:
LOC112147568
Uncharacterized protein.
      
 0.566
ENSOMEP00000026323
Epidermal growth factor receptor pathway substrate 15-like 1a.
      
 0.566
ktn1
Kinectin 1.
      
 0.523
cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4b.
      
 0.505
ENSOMEP00000000434
Succinyl-CoA:glutarate-CoA transferase.
      
 0.471
metrn
Meteorin, glial cell differentiation regulator.
      
 0.465
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
      
 0.461
LOC112157620
Ankyrin repeat and SOCS box containing 2a, tandem duplicate 1.
   
 
 0.410
LOC112143466
Ankyrin repeat and SOCS box containing 2b.
   
 
 0.410
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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