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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kctd10Potassium channel tetramerization domain containing 10. (339 aa)    
Predicted Functional Partners:
ENSOMEP00000036131
UBX domain protein 7.
    
 
 0.929
ubxn1
UBX domain protein 1.
    
 
 0.777
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.757
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.646
LOC112149657
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.646
LOC112159709
Uncharacterized protein.
    
 0.624
LOC112159654
Rho family GTPase 1b.
    
 0.624
rnd3
Rho family GTPase 3a.
    
 0.624
LOC112153862
Rho family GTPase 2.
    
 0.609
LOC112146335
Rho family GTPase 2.
    
 0.609
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.