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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc21bTetratricopeptide repeat domain 21B. (1298 aa)    
Predicted Functional Partners:
ENSOMEP00000035779
Uncharacterized protein.
   
 0.998
wdr35
WD repeat-containing protein 35.
   
 0.993
IFT43
Intraflagellar transport 43.
    
 0.990
IFT122
Intraflagellar transport 122.
   
 0.989
wdr19
WD repeat domain 19.
   
 0.987
ENSOMEP00000031697
Intraflagellar transport 140 homolog (Chlamydomonas).
  
 0.980
ENSOMEP00000015096
Uncharacterized protein.
   
 0.975
ENSOMEP00000010571
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.890
ift74
Intraflagellar transport 74.
   
 0.865
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
    
 0.862
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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