STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDGFL3HDGF like 3. (195 aa)    
Predicted Functional Partners:
cdk13
Cyclin-dependent kinase 13.
    
 
 0.587
ENSOMEP00000012737
Protein kinase domain-containing protein.
    
 
 0.587
ENSOMEP00000020737
Cyclin-dependent kinase 12.
    
 
 0.587
ENSOMEP00000003060
Cyclin T2b; Belongs to the cyclin family.
   
 
 0.528
ccnt2
Cyclin T2; Belongs to the cyclin family.
   
 
 0.528
ENSOMEP00000013193
Cyclin T1; Belongs to the cyclin family.
   
 
 0.528
ENSOMEP00000019026
Cyclin K; Belongs to the cyclin family.
   
 
 0.528
ENSOMEP00000028050
Cyclin Q.
   
 
 0.528
KDM1B
Lysine demethylase 1B.
    
   0.476
maob
Amine oxidase.
    
   0.476
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.