STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
npm3Nucleophosmin/nucleoplasmin, 3. (162 aa)    
Predicted Functional Partners:
LOC112142723
Nucleophosmin 1a.
   
 
0.772
LOC112150901
Nucleophosmin 1b.
  
 
0.770
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 
 0.619
ENSOMEP00000025054
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
      
 0.520
mrpl41
Mitochondrial ribosomal protein L41.
    
  0.516
mrpl11
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
  0.479
LOC112144224
Uncharacterized protein.
    
 
 0.465
ncl
Nucleolin.
    
 
 0.465
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
  0.460
LOC112151134
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 
 0.454
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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