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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112142573POM121 transmembrane nucleoporin. (1165 aa)    
Predicted Functional Partners:
LOC112154894
RAN binding protein 2.
     
 0.983
nup153
Nucleoporin 153.
  
 
0.802
ENSOMEP00000009681
Nucleoporin 188.
     
 0.776
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.748
ENSOMEP00000009756
Uncharacterized protein.
     
 0.733
nup98
Nucleoporin 98.
     
 0.730
ENSOMEP00000023192
Nucleoporin 155.
    
  0.720
ahctf1
AT hook containing transcription factor 1.
     
 0.704
nup50
Nucleoporin 50.
   
 
 0.703
nup35
Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.
   
 
 0.698
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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