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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rassf9Ras association domain family member 9. (438 aa)    
Predicted Functional Partners:
pam
Peptidylglycine alpha-amidating monooxygenase.
    
 
 0.578
mtmr10
Myotubularin related protein 10.
      
 0.461
LOC112155444
Uncharacterized protein.
    
 
 0.426
LOC112142367
Protein phosphatase 1, regulatory subunit 13Ba.
    
 
 0.426
ENSOMEP00000023921
Tumor protein p53 binding protein, 2a.
    
 
 0.426
LOC112157097
Tumor protein p53 binding protein, 2b.
    
 
 0.426
LOC112154772
Uncharacterized protein.
    
 
 0.426
ppp1r13b
Protein phosphatase 1, regulatory subunit 13Bb.
    
 
 0.426
ENSOMEP00000034900
Protein phosphatase 1, regulatory subunit 13 like.
    
 
 0.426
LOC112162215
FERM domain-containing protein.
    
 
 0.417
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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