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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000001829Solute carrier family 2 member 13b; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (619 aa)    
Predicted Functional Partners:
MRPL49
Mitochondrial ribosomal protein L49.
   
 
 0.722
mrpl43
Mitochondrial ribosomal protein L43.
    
 
 0.721
ENSOMEP00000001166
Mitochondrial ribosomal protein L15.
   
   0.720
mrpl46
Mitochondrial ribosomal protein L46.
    
 
 0.718
mrps16
Mitochondrial ribosomal protein S16.
   
 
 0.718
ENSOMEP00000011993
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
   0.715
mrps12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.715
ENSOMEP00000017144
Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
   
   0.713
mrpl34
Mitochondrial ribosomal protein L34.
    
   0.712
dap3
Death associated protein 3.
    
   0.712
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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