STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem38aTransmembrane protein 38A. (293 aa)    
Predicted Functional Partners:
klhl31
Kelch-like family member 31.
   
  
 0.552
lrrc20
Leucine rich repeat containing 20.
   
 
 0.541
tmem161a
Transmembrane protein 161A.
      
 0.536
rhbdd1
Rhomboid domain containing 1.
      
 0.509
smim7
Small integral membrane protein 7.
      
 0.506
dhrs7
Dehydrogenase/reductase (SDR family) member 7; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.497
PLPP7
Phospholipid phosphatase 7 (inactive).
   
  
 0.485
LOC112148935
Docking protein 2.
    
   0.483
LOC112138205
Leucine rich repeat containing 14B.
   
  
 0.474
tmem221
Si:ch211-125m10.6.
   
  
 0.473
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.