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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnajc1DnaJ (Hsp40) homolog, subfamily C, member 1. (505 aa)    
Predicted Functional Partners:
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 0.944
LOC112156076
DnaJ (Hsp40) homolog, subfamily C, member 3b.
   
 0.928
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
0.903
dnajc3
DnaJ (Hsp40) homolog, subfamily C, member 3a.
   
 0.878
sgf29
SAGA complex associated factor 29.
    
 0.853
commd2
COMM domain containing 2.
    
 0.835
dnajb11
DnaJ heat shock protein family (Hsp40) member B11.
   
0.833
ccdc22
Coiled-coil domain containing 22.
    
 0.815
COMMD10
COMM domain containing 10.
    
 0.805
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
   
 0.799
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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