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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112159731DnaJ (Hsp40) homolog, subfamily C, member 5aa. (199 aa)    
Predicted Functional Partners:
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.898
ENSOMEP00000023669
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
 
 0.897
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.881
plrg1
Pleiotropic regulator 1.
    
   0.877
prpf19
Pre-mRNA processing factor 19.
    
   0.876
ENSOMEP00000024541
BUD31 homolog.
    
   0.876
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
 
 0.845
snw1
SNW domain containing 1.
    
 
 0.837
ENSOMEP00000018301
Uncharacterized protein.
 
 0.836
ENSOMEP00000018988
Si:ch211-199o1.2.
 
 0.836
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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