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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112150849Integrin beta; Belongs to the integrin beta chain family. (795 aa)    
Predicted Functional Partners:
ENSOMEP00000001557
Laminin IV type A domain-containing protein.
   
 0.978
thbs2
Thrombospondin 2a.
   
 0.978
thbs1
Thrombospondin 1a.
   
 0.978
LOC112148514
Thrombospondin 4a.
    
  0.976
LOC112163141
Thrombospondin 4b.
    
  0.976
ENSOMEP00000024558
Thrombospondin 3a.
    
  0.976
LOC112158870
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
   
 0.975
ENSOMEP00000032233
Vasodilator stimulated phosphoprotein b.
   
 
 0.972
LOC112147446
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
   
 0.970
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
   
 0.969
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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