STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pex11gPeroxisomal biogenesis factor 11 gamma. (235 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
   
 0.975
LOC112152918
Peroxisomal biogenesis factor 11 alpha.
    
 0.946
ENSOMEP00000007530
Peroxisomal biogenesis factor 11 beta.
    
 0.946
pex13
SH3 domain-containing protein.
   
 0.928
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 0.907
pex14
Peroxisomal biogenesis factor 14.
    
 0.905
fam185a
Family with sequence similarity 185 member A.
    
 0.869
pex3
Peroxisomal biogenesis factor 3.
   
 0.854
pex16
Peroxisomal membrane protein PEX16.
   
 
 0.794
pxmp4
Peroxisomal membrane protein 4; Belongs to the peroxisomal membrane protein PXMP2/4 family.
     
 0.745
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.