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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARAP1ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1. (678 aa)    
Predicted Functional Partners:
LOC112159479
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
     
 0.885
LOC112147080
ArfGAP with SH3 domain, ankyrin repeat and PH domain 3.
   
 0.884
LOC112144724
ArfGAP with coiled-coil, ankyrin repeat and PH domains 3b.
   
  0.805
LOC112159488
ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a.
   
  0.805
asap1
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b.
   
 0.677
LOC112158849
RAP1A, member of RAS oncogene family a.
    
 0.610
LOC112144686
RAP1A, member of RAS oncogene family b.
    
 0.610
LOC112155385
Uncharacterized protein.
    
 0.610
LOC112144861
Uncharacterized protein.
    
  0.607
LOC112159660
Uncharacterized protein.
    
  0.607
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.