STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcgf1Polycomb group ring finger 1. (260 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
   
 0.936
RING1
Ring finger protein 1.
   
 0.936
LOC112158264
THAP-type domain-containing protein.
    
 0.914
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.903
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
    
 0.893
rybp
RING1 and YY1 binding protein b.
    
 0.884
YAF2
YY1 associated factor 2.
    
 0.880
LOC112158420
YY1 associated factor 2.
    
 0.880
mbtd1
Mbt domain containing 1.
    
 0.862
tfdp1
Transcription factor.
    
 0.833
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.