LOC112144155 protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC112144155

RAB27B, member RAS oncogene family. (316 aa)

Predicted Functional Partners:

ENSOMEP00000006163

0.862

LOC112149438

0.778

sytl1

0.778

ENSOMEP00000027089

0.762

ENSOMEP00000024906

0.744

sytl4

0.735

LOC112158148

0.735

sytl5

0.735

LOC112147650

0.703

cd63

0.678

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000006163	LOC112144155	ENSOMEP00000006163	ENSOMEP00000002547	Melanophilin a.	RAB27B, member RAS oncogene family.	0.862
ENSOMEP00000024906	ENSOMEP00000027089	ENSOMEP00000024906	ENSOMEP00000027089	MAP-kinase activating death domain.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.660
ENSOMEP00000024906	LOC112144155	ENSOMEP00000024906	ENSOMEP00000002547	MAP-kinase activating death domain.	RAB27B, member RAS oncogene family.	0.744
ENSOMEP00000027089	ENSOMEP00000024906	ENSOMEP00000027089	ENSOMEP00000024906	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	MAP-kinase activating death domain.	0.660
ENSOMEP00000027089	LOC112144155	ENSOMEP00000027089	ENSOMEP00000002547	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB27B, member RAS oncogene family.	0.762
LOC112144155	ENSOMEP00000006163	ENSOMEP00000002547	ENSOMEP00000006163	RAB27B, member RAS oncogene family.	Melanophilin a.	0.862
LOC112144155	ENSOMEP00000024906	ENSOMEP00000002547	ENSOMEP00000024906	RAB27B, member RAS oncogene family.	MAP-kinase activating death domain.	0.744
LOC112144155	ENSOMEP00000027089	ENSOMEP00000002547	ENSOMEP00000027089	RAB27B, member RAS oncogene family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.762
LOC112144155	LOC112147650	ENSOMEP00000002547	ENSOMEP00000010194	RAB27B, member RAS oncogene family.	Si:ch211-106h4.9.	0.703
LOC112144155	LOC112149438	ENSOMEP00000002547	ENSOMEP00000004989	RAB27B, member RAS oncogene family.	Synaptotagmin-like 2b.	0.778
LOC112144155	LOC112158148	ENSOMEP00000002547	ENSOMEP00000021565	RAB27B, member RAS oncogene family.	Uncharacterized protein.	0.735
LOC112144155	cd63	ENSOMEP00000002547	ENSOMEP00000020043	RAB27B, member RAS oncogene family.	Tetraspanin.	0.678
LOC112144155	sytl1	ENSOMEP00000002547	ENSOMEP00000026846	RAB27B, member RAS oncogene family.	Uncharacterized protein.	0.778
LOC112144155	sytl4	ENSOMEP00000002547	ENSOMEP00000013845	RAB27B, member RAS oncogene family.	Synaptotagmin-like 4.	0.735
LOC112144155	sytl5	ENSOMEP00000002547	ENSOMEP00000033297	RAB27B, member RAS oncogene family.	Synaptotagmin-like 5.	0.735
LOC112147650	LOC112144155	ENSOMEP00000010194	ENSOMEP00000002547	Si:ch211-106h4.9.	RAB27B, member RAS oncogene family.	0.703
LOC112149438	LOC112144155	ENSOMEP00000004989	ENSOMEP00000002547	Synaptotagmin-like 2b.	RAB27B, member RAS oncogene family.	0.778
LOC112158148	LOC112144155	ENSOMEP00000021565	ENSOMEP00000002547	Uncharacterized protein.	RAB27B, member RAS oncogene family.	0.735
cd63	LOC112144155	ENSOMEP00000020043	ENSOMEP00000002547	Tetraspanin.	RAB27B, member RAS oncogene family.	0.678
sytl1	LOC112144155	ENSOMEP00000026846	ENSOMEP00000002547	Uncharacterized protein.	RAB27B, member RAS oncogene family.	0.778