STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112159454Contactin 3a, tandem duplicate 1. (1026 aa)    
Predicted Functional Partners:
LOC112159310
Uncharacterized protein.
    
0.797
ENSOMEP00000006432
Carbonic anhydrase XVI b.
    
 
 0.759
ENSOMEP00000000678
Uncharacterized protein.
    
 
 0.743
ENSOMEP00000000302
Cell adhesion molecule L1-like b.
    
0.709
ENSOMEP00000000513
Neurofascin homolog (chicken) a.
    
0.709
ENSOMEP00000009136
Uncharacterized protein.
    
0.709
ENSOMEP00000009465
Uncharacterized protein.
    
0.709
ENSOMEP00000016519
L1 cell adhesion molecule, paralog a.
    
0.709
LOC112159569
Uncharacterized protein.
    
0.709
nrcam
Neuronal cell adhesion molecule a.
    
0.709
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.