STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112156050Phospholipid phosphatase 3. (312 aa)    
Predicted Functional Partners:
LOC112159097
Ceramide synthase 5.
    
 0.977
LOC112162090
Zgc:91976.
   
 
 0.969
acer3
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
     
 0.964
lpin1
Si:ch73-21k16.1.
    
 0.944
LOC112143225
O-acyltransferase.
    
 0.941
ENSOMEP00000002888
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.934
LOC112160836
Lipin 1.
    
 0.933
ENSOMEP00000034227
Selenoprotein I; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.929
degs1
Delta(4)-desaturase, sphingolipid 1.
     
 0.928
degs2
Delta(4)-desaturase, sphingolipid 2.
     
 0.928
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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