STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112150710TLDc domain-containing protein. (447 aa)    
Predicted Functional Partners:
ENSOMEP00000036131
UBX domain protein 7.
    
   0.839
rsad2
Radical S-adenosyl methionine domain containing 2.
   
  
 0.805
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.713
ENSOMEP00000033255
Mitochondrial ribosomal protein L23.
   
 
 0.713
ENSOMEP00000032804
Mitochondrial ribosomal protein L27.
   
 
 0.711
mrpl46
Mitochondrial ribosomal protein L46.
   
 
 0.708
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.700
mrpl33
Mitochondrial ribosomal protein L33.
   
 
 0.690
ENSOMEP00000001166
Mitochondrial ribosomal protein L15.
   
   0.689
mrpl43
Mitochondrial ribosomal protein L43.
   
   0.689
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.