STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snapc4Uncharacterized protein. (1519 aa)    
Predicted Functional Partners:
ENSOMEP00000019209
Small nuclear RNA activating complex, polypeptide 5.
    
 0.986
ENSOMEP00000006803
Uncharacterized protein.
    
 0.983
ENSOMEP00000018601
Uncharacterized protein.
    
 0.983
snapc3
Small nuclear RNA activating complex, polypeptide 3.
    
 0.982
LOC112140692
Uncharacterized protein.
    
 0.982
ENSOMEP00000035089
General transcription factor IIA, 2.
    
  0.963
gtf2a1
General transcription factor IIA, 1.
    
  0.962
ENSOMEP00000022044
General transcription factor IIA, 1-like.
    
  0.900
tbp
TATA box binding protein.
    
 0.855
ENSOMEP00000007596
Uncharacterized protein.
    
 0.855
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.