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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSOMEP00000003752Uncharacterized protein. (157 aa)    
Predicted Functional Partners:
ENSOMEP00000030424
Integrin beta; Belongs to the integrin beta chain family.
    
  0.646
ENSOMEP00000010591
Uncharacterized protein.
   
  0.623
ENSOMEP00000021778
Uncharacterized protein.
   
  0.623
LOC112145552
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
  0.623
ENSOMEP00000026842
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
    
 0.601
LOC112148748
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
    
 0.601
LOC112139978
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.581
ENSOMEP00000013068
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.581
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.581
NCSTN
Nicastrin.
    
 0.571
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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