LOC112142788 protein (Oryzias melastigma) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC112142788

Estrogen receptor 2b. (668 aa)

Predicted Functional Partners:

ENSOMEP00000033103

0.930

ENSOMEP00000013484

0.892

pgr

0.879

LOC112146043

0.876

LOC112153984

0.876

nrip1

0.872

LOC112158236

0.857

ENSOMEP00000004505

0.815

crebbp

0.815

ENSOMEP00000000883

0.811

Your Current Organism:

Oryzias melastigma

NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOMEP00000000883	ENSOMEP00000004505	ENSOMEP00000000883	ENSOMEP00000004505	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	CREB binding protein a.	0.819
ENSOMEP00000000883	ENSOMEP00000033103	ENSOMEP00000000883	ENSOMEP00000033103	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	Uncharacterized protein.	0.949
ENSOMEP00000000883	LOC112142788	ENSOMEP00000000883	ENSOMEP00000004065	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	Estrogen receptor 2b.	0.811
ENSOMEP00000000883	LOC112146043	ENSOMEP00000000883	ENSOMEP00000004390	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	E1A binding protein p300 b.	0.883
ENSOMEP00000000883	LOC112153984	ENSOMEP00000000883	ENSOMEP00000007732	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	E1A binding protein p300 a.	0.883
ENSOMEP00000000883	LOC112158236	ENSOMEP00000000883	ENSOMEP00000018960	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	V-fos FBJ murine osteosarcoma viral oncogene homolog Ab.	0.998
ENSOMEP00000000883	crebbp	ENSOMEP00000000883	ENSOMEP00000027588	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	CREB binding protein b.	0.819
ENSOMEP00000000883	pgr	ENSOMEP00000000883	ENSOMEP00000022079	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	Progesterone receptor.	0.411
ENSOMEP00000004505	ENSOMEP00000000883	ENSOMEP00000004505	ENSOMEP00000000883	CREB binding protein a.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.819
ENSOMEP00000004505	ENSOMEP00000013484	ENSOMEP00000004505	ENSOMEP00000013484	CREB binding protein a.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.773
ENSOMEP00000004505	ENSOMEP00000033103	ENSOMEP00000004505	ENSOMEP00000033103	CREB binding protein a.	Uncharacterized protein.	0.977
ENSOMEP00000004505	LOC112142788	ENSOMEP00000004505	ENSOMEP00000004065	CREB binding protein a.	Estrogen receptor 2b.	0.815
ENSOMEP00000004505	LOC112146043	ENSOMEP00000004505	ENSOMEP00000004390	CREB binding protein a.	E1A binding protein p300 b.	0.987
ENSOMEP00000004505	LOC112153984	ENSOMEP00000004505	ENSOMEP00000007732	CREB binding protein a.	E1A binding protein p300 a.	0.987
ENSOMEP00000004505	LOC112158236	ENSOMEP00000004505	ENSOMEP00000018960	CREB binding protein a.	V-fos FBJ murine osteosarcoma viral oncogene homolog Ab.	0.786
ENSOMEP00000004505	crebbp	ENSOMEP00000004505	ENSOMEP00000027588	CREB binding protein a.	CREB binding protein b.	0.885
ENSOMEP00000004505	nrip1	ENSOMEP00000004505	ENSOMEP00000014834	CREB binding protein a.	Nuclear receptor interacting protein 1b.	0.663
ENSOMEP00000004505	pgr	ENSOMEP00000004505	ENSOMEP00000022079	CREB binding protein a.	Progesterone receptor.	0.732
ENSOMEP00000013484	ENSOMEP00000004505	ENSOMEP00000013484	ENSOMEP00000004505	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	CREB binding protein a.	0.773
ENSOMEP00000013484	ENSOMEP00000033103	ENSOMEP00000013484	ENSOMEP00000033103	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.803