STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plvapPlasmalemma vesicle associated protein b. (422 aa)    
Predicted Functional Partners:
LOC112150157
Nuclear receptor subfamily 2, group F, member 6b.
    
 
 0.633
nr2f1
Nuclear receptor subfamily 2, group F, member 1a.
    
 
 0.633
ENSOMEP00000010591
Uncharacterized protein.
   
  0.623
ENSOMEP00000021778
Uncharacterized protein.
   
  0.623
ano8
Anoctamin.
      
 0.597
LOC112147181
Anoctamin.
      
 0.597
FABP7
Fatty acid binding protein 7; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
      
 0.597
bola1
BolA family member 1; Belongs to the BolA/IbaG family.
      
 0.597
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.568
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.565
Your Current Organism:
Oryzias melastigma
NCBI taxonomy Id: 30732
Other names: Aplocheilus melastigmus, Indian medaka, Java medaka, O. melastigma, marine medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.